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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT29058 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB_related | ||||||||
Protein Properties | Length: 362aa MW: 39117.2 Da PI: 8.7399 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46 | 1.2e-14 | 118 | 162 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++ + ++lG+g+W+ Ia+ + ++Rt+ q+ s+ qky EMT29058 118 PWTEEEHRTFLAGLEKLGKGDWRGIAKNFVTTRTPTQVASHAQKY 162 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.212 | 111 | 167 | IPR017930 | Myb domain |
SMART | SM00717 | 3.9E-11 | 115 | 165 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.0E-16 | 115 | 167 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.0E-18 | 116 | 166 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.0E-12 | 118 | 162 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-12 | 118 | 161 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.27E-10 | 118 | 163 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MPQDSRPPGM RLFGVTIAPA PAPQLDPPDG DRDPSPNPPV AVREDVMRKC KSMGNLATLA 60 SACPSGDAGG AGDGYLSDGG LLQSSGKRRR AQERKKDNRD SILDLYWEQQ NQMTSSVPWT 120 EEEHRTFLAG LEKLGKGDWR GIAKNFVTTR TPTQVASHAQ KYFLRQTNPN KKKRRSSLFD 180 MMASDLSPAP NCPILPPTMA KFHDMVTMTN QLQNSSLEGV SSSNAANLAK QVTRDLPPPV 240 PSFTATNVDA SLSKMNHMDC FSRVPSLFRP IPIVPEGTPP ATANTSTLTF EANLTSCTSA 300 FLIPQSGPSP LPPATTAKTD HPAENKDLEL TVGLPSQQNM PSQQNMTNNI SSRNAVGVIQ 360 VV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 170 | 174 | KKKRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF951947 | 0.0 | JF951947.1 Triticum aestivum clone TaMYB64 MYB-related protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004972854.1 | 1e-150 | PREDICTED: uncharacterized protein LOC101753432 isoform X1 | ||||
TrEMBL | M8C4Q7 | 0.0 | M8C4Q7_AEGTA; Myb-like protein J | ||||
STRING | MLOC_73122.2 | 1e-160 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5858 | 36 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47390.1 | 7e-34 | MYB_related family protein |